PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001625.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 626aa    MW: 71011.9 Da    PI: 6.4727
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001625.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.61e-10102167271
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskk.mrergferspkqCkekwenlnkrykkikegekkr 71 
                  W+++evl L+++r++m++++ +       We+ s++ ++e gf+rs+++ kek+e+ ++++   +++ +k+
  CCG001625.1 102 WSNDEVLPLLRIRSSMDNWFPEF-----TWEHASSRnLAEAGFKRSAEKWKEKFEEESGYFNSNTDIYSKN 167
                  ********************998.....9**9876516************************999998875 PP

2trihelix84.41.4e-26478564186
     trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++ +  +g+ k+p We++s+ m e g++rs+k+Ck+kwen+nk+++k+k+ +kkr   +s+t pyf+ql 
  CCG001625.1 478 RWPRDEVLALINLRCSLYNNNEdkEGSVKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKR-YINSRTSPYFHQLS 564
                  8*************9766655522789*********************************************8.677789******95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.903100154IPR017877Myb-like domain
CDDcd122038.70E-24477544No hitNo description
PfamPF138376.1E-18477564No hitNo description
PROSITE profilePS500906.528478537IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MFEGVADQFH QFIASRTTSL PLPSLSFPPL HGSSNTTNFP SFDPYTAAAA ITSQVPLQPN  60
LLHSLHQASP TNKNDEKQEN NLMAMNLKFE RERSIPEMVN PWSNDEVLPL LRIRSSMDNW  120
FPEFTWEHAS SRNLAEAGFK RSAEKWKEKF EEESGYFNSN TDIYSKNYRA SFSEFEEIYH  180
GDQNPDQQEA TAGEKKIRKP GEDEQQDKMG QNLEEETTIH QTVVNQSVED NDGKLEQFEK  240
SKRKKRKREK KFEMFKRICE DIVNKMMAQQ EEKHNKLLED IVKRDEENFA REEAWKKLEM  300
DRINKELELR AHEQALAGDR LDTLIKLLKK ITSGDSCAEI LGETSAPDLV KVPKCSNASN  360
SSSLLLAQNP NPASQTSSES QLETPTSSTT TLDHQKSTSM PAKTNTSCTE NQEPQNPSST  420
LAPNIPQEPM TSSTLALAPQ NPSSLNSHNS PSGPSSILPM YKVQAKSTSN DEDDIGKRWP  480
RDEVLALINL RCSLYNNNED KEGSVKAPVW ERISQGMLEL GYKRSAKRCK QKWENINKYF  540
RKTKDASKKR YINSRTSPYF HQLSTLYNHG TLAAPKNRSA SPENQSNLSE TRHSSSSSQN  600
GTSNSAMHVV EGEKNKVQVP PFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247KRKKRKR
2242247RKKRKR
3242249RKKRKREK
4242250RKKRKREKK
5243250KKRKREKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032424.10.0PREDICTED: trihelix transcription factor GTL2-like isoform X1
TrEMBLB9I5E10.0B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-79Trihelix family protein